PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5473.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 254aa    MW: 27396.2 Da    PI: 8.9892
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5473.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601322.5e-41341331100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lqqql+ l+ael+++++e
  Dca5473.1  34 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQLQVLQAELNAIRTE 133
                7**********************************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.59533134IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4134131IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAAALVAQQG GGGGGGRRQM QLGTTPGVLN TITPCAACKL LRRRCAQECP FSPYFSPHEP  60
HKFASVHKVF GASNVSKLLM EVPENQRADA ANSLVYEANV RLRDPVYGCM GAISALQQQL  120
QVLQAELNAI RTEILKFKFR DINNNNNNNN NNNNINVSNI TANDNNTNNS NNSNSNNNNN  180
AATSHVSFFS TTPGVVTLAT QSSPPPPPPA PPLRDPQNSS VSSSMYTQQQ RQRQPSGGSN  240
DYSSISNENI SYFG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369256.14e-80PREDICTED: LOB domain-containing protein 15-like
RefseqXP_004307714.14e-80PREDICTED: LOB domain-containing protein 15
SwissprotQ9AT616e-69LBD13_ARATH; LOB domain-containing protein 13
TrEMBLB9S4B81e-78B9S4B8_RICCO; LOB domain-containing protein, putative
TrEMBLM5X0N65e-79M5X0N6_PRUPE; Uncharacterized protein
STRINGVIT_13s0067g02380.t012e-76(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.15e-68LOB domain-containing protein 15